library(tidyverse)
library(mar)
# Functions --------------------------------------------------------------------
<- function(con) {
lb_trip_new tbl_mar(con, "adb.trip_v") |>
select(trip_id,
vid = vessel_no,
T1 = departure,
hid1 = departure_port_no,
T2 = landing,
hid2 = landing_port_no,
source)
}<- function(con) {
lb_station_new0 tbl_mar(con, "adb.station_v") |>
select(trip_id,
station_id,gid = gear_no,
t1 = fishing_start,
t2 = fishing_end,
lon = longitude,
lat = latitude,
lon2 = longitude_end,
lat2 = latitude_end,
z1 = depth,
z2 = depth_end,
tow_start,everything())
}<- function(con) {
lb_base_new lb_trip_new(con) |>
inner_join(lb_station_new0(con) |>
select(trip_id:tow_start),
by = "trip_id") |>
select(vid, gid, t1:tow_start, everything()) |>
mutate(whack = case_when(between(lon, 10, 30) & between(lat, 62.5, 67.6) ~ "mirror",
between(lon, -3, 3) & gid != 7 ~ "ghost",
.default = "ok"),
lon = ifelse(whack == "mirror",
-lon,
lon),lon2 = ifelse(whack == "mirror",
-lon2,
lon2))
}<- function(con) {
lb_catch_new tbl_mar(con, "adb.catch") |>
mutate(catch = case_when(condition == "GUTT" ~ quantity / 0.8,
== "UNGU" ~ quantity,
condition .default = NA)) |>
select(station_id = fishing_station_id,
sid = species_no,
catch,
weight,
quantity,
condition, catch_type = source_type)
}
<- connect_mar()
con <-
trips lb_trip_new(con) |>
collect() |>
group_by(vid, T1, T2) |>
mutate(replicates = n(),
source = n_distinct(source)) |>
ungroup()
The total number of records in the trip table is 257579 while the number of distinct vessel, departure and arrivals are 254111, a diference of some 3468 records.